PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021299
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 234aa    MW: 26115.4 Da    PI: 4.8041
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021299genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.85.9e-3063120258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                   D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers +dp++++itY  +Hnh
  DCAR_021299  63 ADSWTWRKYGQKPIKGSPFPRGYYRCSSSkGCPARKQVERSLKDPTFIVITYACDHNH 120
                  69*************************998**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-3056122IPR003657WRKY domain
PROSITE profilePS5081129.99857123IPR003657WRKY domain
SuperFamilySSF1182904.45E-2558121IPR003657WRKY domain
SMARTSM007744.1E-3362122IPR003657WRKY domain
PfamPF031061.3E-2464120IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDYHLSENKS LADDDDVSKI SCEAEIMPLV LDDEAPSPKK SKKVEGKRVV TVPMVEGDVY  60
PPADSWTWRK YGQKPIKGSP FPRGYYRCSS SKGCPARKQV ERSLKDPTFI VITYACDHNH  120
LSPVTAKRSQ TTSSDVKFPP EEEAVFANQP DLEPDNVEFA QFVADFGYLS KITSVILENP  180
VPERSICTEP MFSTRDDEDS LFADLGELPG CSLVFQPKDS RKCNFYTPCH NCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-17641231674WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083309.16e-64PREDICTED: probable WRKY transcription factor 69
SwissprotQ9LP561e-48WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A127AZ164e-95A0A127AZ16_PANGI; WRKY6 transcription factor
STRINGGLYMA12G33990.15e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74682232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.17e-50WRKY DNA-binding protein 65